Rady Children's Hospital San Diego
Rady Children’s Hospital-San Diego is a nonprofit hospital
Schedule: Days, 8-hour shifts
FTE: Full-Time, 80 hours per 2 week pay period
Location: Main Campus
Computational-biologists/bioinformaticists in a large-scale “production” setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time whole-genome sequencing based clinical setting. Part of a team that’ll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs.
Bachelor’s Degree in Area of Study in a Field Related to the Position
1 year of experience
Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants
Experience developing and maintaining pipelines for 24×7 automated bioinformatics analyses
Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.
Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash
Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.
3 years of experience
Experience in CNV and SV calling
Previous experience working in a CAP/CLIA environment
Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools